I love how these Sourdough Focaccia Muffins turn a simple focaccia dough into something special. The sourdough flavor pairs perfectly with the buttery, garlicky topping. They’re easy to make and even easier to enjoy.
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Why This Recipe Works
I love making these Sourdough Focaccia Muffins when I want all the flavor and texture of classic focaccia in a smaller, easier-to-serve form. Here’s what makes them special:
- Soft and Airy Texture: Each muffin has that signature focaccia crumb – light, chewy, and full of tiny air pockets. It’s the same texture I love in my Sourdough Focaccia Bread, just baked in a fun, individual size.
- Golden, Crispy Tops: The olive oil and butter help the tops bake up perfectly crisp and golden. Every bite has that satisfying crunch that makes focaccia so good.
- Garlic Butter Flavor: The melted butter, garlic, and Parmesan soak into the dimples, giving each muffin a rich, savory flavor that’s hard to resist.
- Perfect for Any Meal: These muffins are great for breakfast, lunch, or dinner. They pair beautifully with soups, salads, or pasta, and they’re easy to pack for picnics or lunches.
- Endless Flavor Options: You can easily change up the toppings. Try a sweeter version with cinnamon and pumpkin, like my Sourdough Cinnamon Pumpkin Focaccia, or keep it savory with herbs and cheese.

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Ingredients
- Bread Flour – Gives the muffins their chewy texture and structure. Bread flour has a higher protein content that helps create the classic focaccia crumb. You can use all-purpose flour if needed, but the texture will be slightly softer.
- Warm Filtered Water – Hydrates the dough and helps the gluten form properly. Warm water also keeps the sourdough starter active during mixing and fermentation.
- Leavened Sourdough Starter – The natural yeast that gives the muffins their rise and mild tang. Make sure your starter is bubbly and active before adding it to the dough.
- Butter – Forms the base of the topping, soaking into the dimples for a rich, savory finish. You can use olive oil instead if you prefer a dairy-free option.
- Parmesan Cheese – Adds a salty, nutty flavor that complements the sourdough beautifully. Pecorino Romano or Asiago are great substitutes.
- Red Pepper Flakes – Provide a gentle heat that balances the buttery richness. Adjust the amount to your spice preference.
- Parsley – Fresh parsley adds color and a mild herbal note. You can swap it for basil, thyme, or chives depending on what you have on hand.
- Garlic – Pressed garlic infuses the topping with a deep, aromatic flavor that spreads through each muffin as it bakes.
For full list of ingredients and instructions, see recipe card below.
Instructions


- Mix the Dough: Combine the bread flour, warm water, sourdough starter, salt, and olive oil in a large bowl until a shaggy dough forms.
- Stretch and Fold: Let the dough rest, then complete 3 sets of coil folds with resting time between each set.
- Bulk Ferment: Leave the dough at room temperature until it has risen and looks light and airy.
- Portion the Dough: Divide the dough into equal pieces and place them into well-oiled muffin tin cups.


- Let Rise: Allow the dough to proof until puffy and nearly fills each muffin cup.
- Make the Topping: Stir together the melted butter, Parmesan, red pepper flakes, parsley, garlic, and salt.
- Top and Dimple: Spoon the butter mixture over each muffin and use your fingertips to create focaccia-style dimples.
- Bake and Serve: Bake until golden brown, brush with any remaining butter mixture, then remove from the pan and serve warm.
For full list of ingredients and instructions, see recipe card below.

Substitutions & Variations
Here are some of my favorite substitutions and variations:
- Cheese Options: I like using Parmesan for its salty flavor, but mozzarella, cheddar, or Asiago work great too. You can even mix a few for extra richness.
- Herb Swaps: Try rosemary, thyme, or basil instead of parsley. Fresh or dried both work fine – use what’s in your kitchen.
- Spice Level: If you prefer mild muffins, skip the red pepper flakes. For more heat, add a pinch of cayenne or some finely chopped jalapeño.

What to Serve with Sourdough Focaccia Muffins
Soups and Stews
- These sourdough focaccia muffins are perfect with warm, cozy soups because they’re soft, savory, and brushed with garlic-Parmesan butter. We love serving them with Homemade Chicken Soup, Instant Pot White Chicken Chili, or Dill Pickle Soup with Kielbasa for an easy comfort meal.
- They also pair well with Lasagna Soup with Ricotta Cheese or Russian Stew (Zharkoye) when you want something hearty. The buttery tops and fluffy centers are perfect for dipping into broth, sauce, or anything creamy.
Pasta and Saucy Dinners
- Sourdough focaccia muffins make a great side for pasta nights because the garlic, Parmesan, parsley, and red pepper flakes already have that cozy Italian-inspired flavor. Serve them with Creamy Roasted Butternut Squash Pasta, One-Pot Chicken Alfredo Tortellini Bake, or Lemon Ricotta Pasta for a simple dinner that feels homemade and complete.
- They would also be delicious with Creamy Chicken Orzotto or Creamy Chicken and Broccoli Casserole. The muffins add a warm bread basket feel and are perfect for scooping up extra sauce.

FAQs
Yes, an active and bubbly starter is important for good rise and texture. If your starter hasn’t been fed recently, give it a feeding a few hours before baking so it’s lively and ready to use.
You can mix the dough the night before and let it ferment in the refrigerator overnight. The next day, let it come to room temperature before dividing and baking.
You can swap the Parmesan and herbs for your favorites – rosemary and sea salt, caramelized onions, or even a sprinkle of mozzarella and olives. The recipe is flexible, so feel free to experiment.
Store leftover muffins in an airtight container at room temperature for up to 2 days or in the fridge for up to 4 days. Reheat in the oven at 350°F for about 5 minutes, or freeze for up to 2 months and warm before serving.
More Sourdough Recipes You’ll Enjoy
- Sourdough Pumpkin Cream Cheese Muffins – If you love all things sourdough, then this recipe is for you! These Sourdough pumpkin muffins are pipped with cream cheese filling and have beautiful fall flavors.
- Sourdough Bagels – These sourdough bagels are savory, chewy, crusty, and deliciously tangy. They are a fantastic way to start your morning or for brunch.
- Double Chocolate Sourdough Bread – This is a double chocolate sourdough bread recipe! It has a brownie’s flavor and a sourdough loaf’s texture! Best of both worlds! This loaf has a rich chocolate flavor with chocolate chips in every bite.
- Sourdough Banana Bread – Fluffy & Moist Sourdough Discard Banana Bread If you’ve got spotty bananas and some sourdough discard sitting in the fridge, this sourdough banana bread recipe is about to be your new favorite. It’s moist, fluffy, and perfect for breakfast or snack.
If you try this Sourdough Focaccia Muffins recipe, let me know what you think! Rate and review this recipe in the comments below. Don’t forget to take a picture and tag me on Instagram @lizasfarmhouse!

Sourdough Focaccia Muffins
Ingredients
Method
- Feed your sourdough starter and let it become leavened and ready to use.
- In a large bowl, mix the bread flour, warm filtered water, sourdough starter, salt, and olive oil until no dry flour remains. The dough will look wet and shaggy.
- Cover the bowl with plastic wrap or a tea towel and let the dough rest at room temperature for 1 hour.
- Complete 3 sets of coil folds, resting the dough for 30 minutes between each set.
- Leave the dough on the counter to bulk ferment for 6 to 8 hours.
- Before the final rise, divide the dough into pieces weighing about 85 grams each.
- Oil each muffin tin, then place one piece of dough into each cup. The dough should only fill each muffin cup about halfway.
- Let the dough rise until it looks puffy and fills the muffin tin.
- Preheat the oven to 425°F.
- In a glass cup, melt the butter, then stir in the Parmesan cheese, red pepper flakes, chopped parsley, pressed garlic, and salt.
- Spoon some of the butter mixture over the top of each muffin.
- Dimple each muffin the same way you would regular focaccia.
- Bake for 18 to 22 minutes.
- After baking, brush the muffins with any extra butter mixture.
- Remove the muffins from the tin and serve.
Notes
- Use an active, bubbly starter for the best rise and flavor. A sluggish starter will make the muffins dense.
- Mix the dough until no dry flour remains, but don’t overwork it. The dough should feel soft and slightly sticky.
- Keep your hands lightly oiled when doing coil folds to prevent sticking and make shaping easier.
- Let the dough fully bulk ferment until it looks airy and doubled in size. This step builds flavor and texture.
- Only fill each muffin cup halfway before the final rise. The dough will expand and fill the tin as it proofs.
- Dimple the tops gently after adding the butter mixture so the flavor seeps into the dough.
- Watch the bake time closely. The muffins should be golden on top and pull away slightly from the edges of the tin.
- Brush with any leftover butter mixture right after baking for extra flavor and shine.
- Cool the muffins on a wire rack to keep the bottoms from getting soggy.
- Store leftovers in an airtight container and reheat in the oven at 350°F for a few minutes to bring back their crisp edges.




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